Client side decompression technique provides faster DNA sequence data delivery

Client side decompression technique provides faster DNA sequence data delivery

Sufi, F, Fang, J, Cosic, I and Ferguson, R 2005, 'Client side decompression technique provides faster DNA sequence data delivery', in Y. T. Zhang (ed.) Proceedings of the 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Shanghai, 17-18 January 2006.

Document type:	Conference Paper
Collection:	Conference Papers

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Title	Client side decompression technique provides faster DNA sequence data delivery
Author(s)	Sufi, F Fang, J Cosic, I Ferguson, R
Year	2005
Conference name	International Conference of the Engineering in Medicine and Biology Society
Conference location	Shanghai
Conference dates	17-18 January 2006
Proceedings title	Proceedings of the 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
Editor(s)	Y. T. Zhang
Publisher	IEEE
Place of publication	Shanghai
Abstract	DNA sequences are generally very long chains of sequentially linked nucleotides. There are four different nucleotides and combinations of these build the nucleotide information of sequence files contained in data sources. When a user searches for any sequence for an organism, a compressed sequence file can be sent from the data source to the user. The compressed file then can be decompressed at the client end resulting in reduced transmission time over the Internet. A compression algorithm that provides a moderately high compression rate with minimal decompression time is proposed in this paper. We also compare a number of different compression techniques for achieving efficient delivery methods from an intelligent genomic search agent over the Internet
Subjects	Biomedical Engineering not elsewhere classified
Keyword(s)	decompression techniques DNA sequencing
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