Community structure of marine sedimentary protists in relation to flow and grain size

Shimeta, J, Gast, R and Rose, J 2007, 'Community structure of marine sedimentary protists in relation to flow and grain size', Aquatic Microbial Ecology, vol. 48, no. 1, pp. 91-104.


Document type: Journal Article
Collection: Journal Articles

Title Community structure of marine sedimentary protists in relation to flow and grain size
Author(s) Shimeta, J
Gast, R
Rose, J
Year 2007
Journal name Aquatic Microbial Ecology
Volume number 48
Issue number 1
Start page 91
End page 104
Total pages 14
Publisher Inter-Research
Abstract Populations of unicellular, marine sedimentary protists are constrained by a variety of physical environmental factors, but influences of flow regime have rarely been studied. We compared community structure among 3 subtidal sites differing in flow strength and grain size in a coastal bay. We used denaturing gradient gel electrophoresis (DGGE) to assess eukaryotic diversity based on 18S rDNA, and quantitative Protargol staining (QPS) to examine ciliate communities by microscopy. Sedimentary 18S rDNA in mid-summer was dominated by diatoms. Analyses of gel bands by presence/absence among sites, dendogram, and multidimensional scaling showed that eukaryotic community structure was related to grain size more strongly than to flow regime. Among bands identified as diatoms by recovery and sequence analysis, 4 taxa (40%) differed among sites in relation to flow strength, and 2 taxa (29%) differed in relation to grain size. No bands had sequences matching ciliates, but QPS showed that 6 ciliate species (20 %) were distributed in relation to flow, and 10 species (33%), in relation to grain size. Ciliate species richness and community similarity were greatest for the 2 strong-flow sites, despite differences in mean grain size. The strong-flow, silty site had the high-est concentrations of chlorophyll a, total ciliates, karyorelictids, and scuticociliates, and the lowest ciliate species diversity. DGGE was run again for this site 1 mo later and revealed a shift in the rDNA pool to dominance by metazoans. Flow regime and grain size may be important factors structuring subtidal communities of sedimentary protists.
Subject Marine and Estuarine Ecology (incl. Marine Ichthyology)
Keyword(s) Benthic
Ciliates
community structure
DGGE
diatoms
flow
grain size
ISSN 0948-3055
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